From 9e0006ea6a0f7281ad16e3350cf89f8aa9749951 Mon Sep 17 00:00:00 2001 From: jlightner Date: Fri, 3 Apr 2026 22:53:18 +0000 Subject: [PATCH] =?UTF-8?q?feat:=20Deployed=20reindex=20script=20to=20ub01?= =?UTF-8?q?=20via=20image=20rebuild,=20started=20full=209=E2=80=A6?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - "backend/scripts/reindex_lightrag.py" GSD-Task: S04/T02 --- .gsd/milestones/M019/slices/S04/S04-PLAN.md | 2 +- .../M019/slices/S04/tasks/T01-VERIFY.json | 18 +++++ .../M019/slices/S04/tasks/T02-SUMMARY.md | 79 +++++++++++++++++++ 3 files changed, 98 insertions(+), 1 deletion(-) create mode 100644 .gsd/milestones/M019/slices/S04/tasks/T01-VERIFY.json create mode 100644 .gsd/milestones/M019/slices/S04/tasks/T02-SUMMARY.md diff --git a/.gsd/milestones/M019/slices/S04/S04-PLAN.md b/.gsd/milestones/M019/slices/S04/S04-PLAN.md index 83c613d..aa0ff83 100644 --- a/.gsd/milestones/M019/slices/S04/S04-PLAN.md +++ b/.gsd/milestones/M019/slices/S04/S04-PLAN.md @@ -73,7 +73,7 @@ Create `backend/scripts/reindex_lightrag.py` — a standalone script that: - Estimate: 1.5h - Files: backend/scripts/reindex_lightrag.py, backend/pipeline/stages.py, backend/models.py, backend/config.py - Verify: ssh ub01 'docker exec chrysopedia-api python3 /app/scripts/reindex_lightrag.py --dry-run --limit 3' exits 0 and prints formatted technique page text -- [ ] **T02: Run full reindex on ub01 and verify graph quality** — ## Description +- [x] **T02: Deployed reindex script to ub01 via image rebuild, started full 90-page corpus reindex — 8 pages submitted with 168 entities extracted including creators, plugins, and technique concepts** — ## Description Deploy the reindex script to ub01, start the full 90-page reindex in a background session, and verify graph quality once pages are processed. The full run takes 3-6 hours (serial LightRAG processing with LLM entity extraction per page). Start it backgrounded and verify on whatever has completed. diff --git a/.gsd/milestones/M019/slices/S04/tasks/T01-VERIFY.json b/.gsd/milestones/M019/slices/S04/tasks/T01-VERIFY.json new file mode 100644 index 0000000..df98815 --- /dev/null +++ b/.gsd/milestones/M019/slices/S04/tasks/T01-VERIFY.json @@ -0,0 +1,18 @@ +{ + "schemaVersion": 1, + "taskId": "T01", + "unitId": "M019/S04/T01", + "timestamp": 1775255850488, + "passed": false, + "discoverySource": "task-plan", + "checks": [ + { + "command": "ssh ub01 'docker exec chrysopedia-api python3 /app/scripts/reindex_lightrag.py --dry-run --limit 3' exits 0 and prints formatted technique page text", + "exitCode": 2, + "durationMs": 715, + "verdict": "fail" + } + ], + "retryAttempt": 1, + "maxRetries": 2 +} diff --git a/.gsd/milestones/M019/slices/S04/tasks/T02-SUMMARY.md b/.gsd/milestones/M019/slices/S04/tasks/T02-SUMMARY.md new file mode 100644 index 0000000..3174592 --- /dev/null +++ b/.gsd/milestones/M019/slices/S04/tasks/T02-SUMMARY.md @@ -0,0 +1,79 @@ +--- +id: T02 +parent: S04 +milestone: M019 +provides: [] +requires: [] +affects: [] +key_files: ["backend/scripts/reindex_lightrag.py"] +key_decisions: ["Deployed via image rebuild (not docker cp) so script persists across container restarts", "Used docker exec -d for background execution inside existing API container"] +patterns_established: [] +drill_down_paths: [] +observability_surfaces: [] +duration: "" +verification_result: "Dry-run exits 0 with formatted output for 3 pages. Status counts increased from 4 to 8 (6 processed). All 10 chrysopedia containers healthy. Graph label list shows 168 entities with proper creator/plugin/concept extraction. Query endpoint timed out during active indexing (expected LLM contention)." +completed_at: 2026-04-03T22:52:09.251Z +blocker_discovered: false +--- + +# T02: Deployed reindex script to ub01 via image rebuild, started full 90-page corpus reindex — 8 pages submitted with 168 entities extracted including creators, plugins, and technique concepts + +> Deployed reindex script to ub01 via image rebuild, started full 90-page corpus reindex — 8 pages submitted with 168 entities extracted including creators, plugins, and technique concepts + +## What Happened +--- +id: T02 +parent: S04 +milestone: M019 +key_files: + - backend/scripts/reindex_lightrag.py +key_decisions: + - Deployed via image rebuild (not docker cp) so script persists across container restarts + - Used docker exec -d for background execution inside existing API container +duration: "" +verification_result: mixed +completed_at: 2026-04-03T22:52:09.252Z +blocker_discovered: false +--- + +# T02: Deployed reindex script to ub01 via image rebuild, started full 90-page corpus reindex — 8 pages submitted with 168 entities extracted including creators, plugins, and technique concepts + +**Deployed reindex script to ub01 via image rebuild, started full 90-page corpus reindex — 8 pages submitted with 168 entities extracted including creators, plugins, and technique concepts** + +## What Happened + +Copied reindex_lightrag.py to ub01 repo, rebuilt chrysopedia-api image to bake the script in permanently, restarted the container. Verified dry-run passes (slice verification check #1). Started full reindex backgrounded inside the API container. After ~10 minutes: 8 pages submitted, 6 processed, 2 processing. Graph shows 168 entities including 4 creators, 7 plugins, and rich technique concepts. Query endpoint timed out during active indexing due to shared LLM backend — expected, will work post-indexing. + +## Verification + +Dry-run exits 0 with formatted output for 3 pages. Status counts increased from 4 to 8 (6 processed). All 10 chrysopedia containers healthy. Graph label list shows 168 entities with proper creator/plugin/concept extraction. Query endpoint timed out during active indexing (expected LLM contention). + +## Verification Evidence + +| # | Command | Exit Code | Verdict | Duration | +|---|---------|-----------|---------|----------| +| 1 | `ssh ub01 'docker exec chrysopedia-api python3 /app/scripts/reindex_lightrag.py --dry-run --limit 3'` | 0 | ✅ pass | 3200ms | +| 2 | `ssh ub01 'curl -sf http://localhost:9621/documents/status_counts'` | 0 | ✅ pass (processed: 4→6, all: 8) | 2700ms | +| 3 | `ssh ub01 'docker ps --filter name=chrysopedia --format ...'` | 0 | ✅ pass (all healthy) | 3400ms | +| 4 | `ssh ub01 'curl -sf http://localhost:9621/graph/label/list'` | 0 | ✅ pass (168 entities) | 3400ms | +| 5 | `ssh ub01 'curl -sf --max-time 60 -X POST http://localhost:9621/query ...'` | 28 | ⏳ timeout (LLM busy with indexing) | 60000ms | + + +## Deviations + +None. + +## Known Issues + +Query endpoint times out during active indexing due to shared LLM backend. Full reindex takes 3-6 hours for all 90 pages. + +## Files Created/Modified + +- `backend/scripts/reindex_lightrag.py` + + +## Deviations +None. + +## Known Issues +Query endpoint times out during active indexing due to shared LLM backend. Full reindex takes 3-6 hours for all 90 pages.